To view all available command line options, run

\begin{minted}{bash}
hms --help
\end{minted}

Some important options:

\begin{minted}{bash}
--import [item]
\end{minted}

(shorthand: \mintinline{bash}|-i [item]|),
where \mintinline{bash}|[item]| can be\\
\mintinline{bash}|mesh|,
\mintinline{bash}|field|,
\mintinline{bash}|sourceField|,
\mintinline{bash}|constantField|, or
\mintinline{bash}|all|.

Use this option to import non-native mesh or raster data
to the native VTK format.


\begin{minted}{bash}
--clear
\end{minted}
(shorthand \mintinline{bash}|-c|)
Use this option to remove all VTK output files.

\begin{minted}{bash}
--dry-run
\end{minted}
(shorthand \mintinline{bash}|-n|),
Use this option to view the print output of a command,
without modifying files or running the simulation
\\

Note that most options can be combined, e.g.

\begin{minted}{bash}
hms -ci mesh -n
\end{minted}

would
\begin{itemize}
	\item clear output files (\mintinline{bash}|-c|), and
	\item import the mesh (\mintinline{bash}|-i mesh|).
\end{itemize}

However, because of \mintinline{bash}|-n|,
it only prints which output files would be removed,
and does not write the imported mesh to the case files.

%The \mintinline{bash}|-n| flag allows you to review the printed output
%of a \mintinline{bash}|hms| command,
%without the danger of accidentally modifying or deleting files.
%If the output is satisfactory,
%you can then repeat the command without the \mintinline{bash}|-n| flag.

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